Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG010712Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG01071#2.bb
Item Count: 34,879
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440081Start position in chromosome
chromEnd227907059End position in chromosome
name13Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand++ or - for strand
tSize248956422size of target sequence
qNameJAHBCE010000048.1name of query sequence
qSize66462704size of query sequence
qStart30794start of alignment on query sequence
qEnd66461509end of alignment on query sequence
chainScore6254201756score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1161440081227907059131000+248956422JAHBCE010000048.16646270430794664615096254201756
chr1227915332240184898581000-248956422JAHBCE010000063.1123812696719123812651146615692
chr122855640122855685690731000-248956422JAHBCE010000063.11238126980656180704043861
chr122855640722855682094351000-248956422JAHBCE010000063.11238126970803070844340247
chr122855640822855682094431000-248956422JAHBCE010000063.11238126975509875551040147
chr122855642022855831230981000-248956422JAHBCE010000063.112381269667698669618181422
chr122855642422855682096101000-248956422JAHBCE010000063.11238126976407776447338461
chr122855642922855685693411000-248956422JAHBCE010000063.11238126978641778686841124
chr122855643222855682097101000-248956422JAHBCE010000063.11238126972374472413237810
chr122855643422855682097351000-248956422JAHBCE010000063.11238126969685069723637619