Schema for HPRC Chains v0.1 - HPRC Chains version 0.1 prototype April 2022
  Database: hg38    Primary Table: HG004381Chain Data last updated: 2022-04-28
Big Bed File Download: /gbdb/hg38/hprcChain/HG00438#1.bb
Item Count: 27,487
Format description: bigChain pairwise alignment
fieldexampledescription
chromchr1Reference sequence chromosome or scaffold
chromStart161440325Start position in chromosome
chromEnd168463853End position in chromosome
name77Name or ID of item, ideally both human readable and unique
score1000Score (0-1000)
strand-+ or - for strand
tSize248956422size of target sequence
qNameJAHBCB010000099.1name of query sequence
qSize7068082size of query sequence
qStart24346start of alignment on query sequence
qEnd7059014end of alignment on query sequence
chainScore659577139score from chain

Sample Rows
 
chromchromStartchromEndnamescorestrandtSizeqNameqSizeqStartqEndchainScore
chr1161440325168463853771000-248956422JAHBCB010000099.17068082243467059014659577139
chr1168478160228637987121000-248956422JAHBCB010000006.1600967635796600967635546616548
chr122855621522855835727141000+248956422JAHBCB010000053.118254034125649140006186436
chr122855639122855803931621000+248956422JAHBCB010000053.1182540342838130057158138
chr1228556391246689840541000+248956422JAHBCB010000053.118254034140253182501401698616826
chr122855639322855702362911000-248956422JAHBCB010000228.133703130131367160323
chr122855639422855817929591000-248956422JAHBCB010000006.1600967636008494460086759170644
chr122855640122855829328031000+248956422JAHBCB010000053.118254034162660164580181647
chr122855640122855836426951000+248956422JAHBCB010000053.1182540341270614697188045
chr12285564052286475737251000-248956422JAHBCB010000228.1337032199132171910794