Schema for Primate RBest Chain/Net - Primate Reciprocal Best Chain and Net Alignments
  Database: hg38    Primary Table: chainRBestCerAty1    Row Count: 23,643   Data last updated: 2017-10-27
Format description: Summary info about a chain of alignments
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
score 1262double range score of chain
tName chr1varchar(255) values Target sequence name
tSize 248956422int(10) unsigned range Target sequence size
tStart 54704int(10) unsigned range Alignment start position in target
tEnd 80447int(10) unsigned range Alignment end position in target
qName NW_012001627v1varchar(255) values Query sequence name
qSize 14009840int(10) unsigned range Query sequence size
qStrand +char(1) values Query strand
qStart 2620353int(10) unsigned range Alignment start position in query
qEnd 2645479int(10) unsigned range Alignment end position in query
id 1796int(10) unsigned range chain id

Sample Rows
 
binscoretNametSizetStarttEndqNameqSizeqStrandqStartqEndid
5851262chr12489564225470480447NW_012001627v114009840+262035326454791796
585832chr12489564229205792169NW_012000942v13358069+251012522815090
585120chr1248956422102631102633NW_012003946v118463412+14364427143644294473
58567chr1248956422116426116427NW_012002181v129793205-935477693547772927
58690chr1248956422201161206867NW_012007478v18243410+47726598822452
58639083chr1248956422258474259307NW_012004299v1506653-96381085410923
58716chr1248956422268213268214NW_012000942v13358069+246882468919247
587106chr1248956422362230362233NW_012000942v13358069+30605306083683
588100chr1248956422453908453910NW_012001627v114009840+268056326805652498
588719chr1248956422514494515763NW_012005081v1113584-50047513311877

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.