Schema for Primate RBest Chain/Net - Primate Reciprocal Best Chain and Net Alignments
  Database: hg38    Primary Table: chainRBestCebCap1    Row Count: 28,575   Data last updated: 2017-10-27
Format description: Summary info about a chain of alignments
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
score 24double range score of chain
tName chr1varchar(255) values Target sequence name
tSize 248956422int(10) unsigned range Target sequence size
tStart 15273int(10) unsigned range Alignment start position in target
tEnd 15541int(10) unsigned range Alignment end position in target
qName NW_016108175v1varchar(255) values Query sequence name
qSize 343513int(10) unsigned range Query sequence size
qStrand -char(1) values Query strand
qStart 321790int(10) unsigned range Alignment start position in query
qEnd 322059int(10) unsigned range Alignment end position in query
id 4088int(10) unsigned range chain id

Sample Rows
 
binscoretNametSizetStarttEndqNameqSizeqStrandqStartqEndid
58524chr12489564221527315541NW_016108175v1343513-3217903220594088
585513chr12489564225475562567NW_016107434v15852869+488894848961392477
585172chr124895642295077101208NW_016107390v17665841-301902830257154510
58539chr1248956422124554124555NW_016107925v1970709-2952932952943506
586601chr1248956422149897149928NW_016108131v1336754-24279624282711773
58611chr1248956422185731185732NW_016108175v1343513-3217263217274132
58683chr1248956422260305260307NW_016107758v11760635+725087251010166
587109chr1248956422286268286271NW_016107925v1970709-2814192814225030
587240chr1248956422360504379932NW_016107351v110690711+63174738146033
5885143chr1248956422502741502836NW_016107440v15504798-14809861481081443803

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.