Schema for Primate RBest Chain/Net - Primate Reciprocal Best Chain and Net Alignments
  Database: hg38    Primary Table: chainRBestAotNan1    Row Count: 37,819   Data last updated: 2017-10-27
Format description: Summary info about a chain of alignments
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
score 2549double range score of chain
tName chr1varchar(255) values Target sequence name
tSize 248956422int(10) unsigned range Target sequence size
tStart 11788int(10) unsigned range Alignment start position in target
tEnd 29798int(10) unsigned range Alignment end position in target
qName NW_018495246v1varchar(255) values Query sequence name
qSize 2021645int(10) unsigned range Query sequence size
qStrand -char(1) values Query strand
qStart 1481982int(10) unsigned range Alignment start position in query
qEnd 1504028int(10) unsigned range Alignment end position in query
id 2578int(10) unsigned range chain id

Sample Rows
 
binscoretNametSizetStarttEndqNameqSizeqStrandqStartqEndid
5852549chr12489564221178829798NW_018495246v12021645-148198215040282578
585479chr12489564224717862935NW_018503519v133210471+702458570491992057
5853703chr12489564224719647265NW_018506638v14904-47774833194525
58526656chr12489564226135062919NW_018512375v18403-175129710134
585183chr124895642295077101208NW_018508530v18402870+451331445196063745
58547chr1248956422124554124555NW_018505394v11524500-8765818765822479
58649chr1248956422167106167109NW_018503064v13383477-13836211383624253893
586144chr1248956422174927174935NW_018487315v115679484+100960471009605535365
5863799chr1248956422182017182098NW_018488858v123613886-5537455538288115
586156chr1248956422186834186838NW_018495246v12021645-148816214881662589

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.