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AssertionError

Python 3.6.8: /usr/bin/python3 Tue May 7 03:56:24 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/usr/local/apache/cgi-bin/hgGeneGraph in <module>()

2049     htmlMiddle()

2050     jsInlineFinish()

2051     htmlPageEnd()

2052

=> 2053 main()

main = <function main>

/usr/local/apache/cgi-bin/hgGeneGraph in main()

2047     htmlHeader()

2048     printInlineAndStyles()

=> 2049     htmlMiddle()

2050     jsInlineFinish()

2051     htmlPageEnd()

global htmlMiddle = <function htmlMiddle>

/usr/local/apache/cgi-bin/hgGeneGraph in htmlMiddle()

2020         exit(0)

2021

=> 2022     showGraphBrowser()

2023

2024 def main():

global showGraphBrowser = <function showGraphBrowser>

/usr/local/apache/cgi-bin/hgGeneGraph in showGraphBrowser()

1379     conn = sqlConnect(GGDB)

1380

=> 1381     graphLinks, lowLinks = buildGraph(conn, gene, geneCount, MINSUPP, addNeighbors)

1382     weightedLinks, minAbsCount = flattenLink(graphLinks)

1383

graphLinks undefined, lowLinks undefined, global buildGraph = <function buildGraph>, conn = <pymysql.connections.Connection object>, gene = 'C7ORF25', geneCount = 25, global MINSUPP = 2, addNeighbors = True

/usr/local/apache/cgi-bin/hgGeneGraph in buildGraph(conn=<pymysql.connections.Connection object>, gene='C7ORF25', geneCount=25, minSupp=2, addNeighbors=True)

543             # add the high links back to the graph

544             for pair, linkData in otherLinks.items():

=>  545                 assert(pair not in graphLinks)

546                 graphLinks[pair] = linkData

547

pair = ('BRD4', 'C7orf25'), graphLinks = defaultdict(<class 'set'>, {('BRD4', 'C7orf25'):...: (0, ['intact', 'biogrid'], ['ppi'], 2745, '')})

AssertionError:
      args = ()
      with_traceback = <built-in method with_traceback of AssertionError object>