Human Gene SUCNR1 (ENST00000362032.6_3) from GENCODE V45lift37
  Description: Homo sapiens succinate receptor 1 (SUCNR1), mRNA. (from RefSeq NM_033050)
RefSeq Summary (NM_033050): This gene encodes a G-protein-coupled receptor for succinate, an intermediate molecule of the citric acid cycle. It is involved in the promotion of hematopoietic progenitor cell development, and it has a potential role in renovascular hypertension which has known correlations to renal failure, diabetes and atherosclerosis. [provided by RefSeq, Oct 2009]. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments.
Gencode Transcript: ENST00000362032.6_3
Gencode Gene: ENSG00000198829.6_6
Transcript (Including UTRs)
   Position: hg19 chr3:151,591,431-151,602,407 Size: 10,977 Total Exon Count: 3 Strand: +
Coding Region
   Position: hg19 chr3:151,597,681-151,599,336 Size: 1,656 Coding Exon Count: 2 

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Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureGO AnnotationsmRNA Descriptions
PathwaysOther NamesMethods
Data last updated at UCSC: 2024-04-24 11:59:55

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:151,591,431-151,602,407)mRNA (may differ from genome)Protein (334 aa)
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-  Comments and Description Text from UniProtKB
  ID: SUCR1_HUMAN
DESCRIPTION: RecName: Full=Succinate receptor 1 ; AltName: Full=G-protein coupled receptor 91; AltName: Full=P2Y purinoceptor 1-like;
FUNCTION: G protein-coupled receptor for succinate able to mediate signaling through Gq/GNAQ or Gi/GNAI second messengers depending on the cell type and the processes regulated (By similarity) (PubMed:15141213, PubMed:34133934, PubMed:23770096). Succinate-SUCNR1 signaling serves as a link between metabolic stress, inflammation and energy homeostasis (PubMed:18820681, PubMed:34133934). In macrophages, plays a range of immune-regulatory roles. During inflammation, succinate-SUCNR1 signaling may act as an anti-inflammatory mediator or boost inflammation depending on the inflammatory status of cells (By similarity). Hyperpolarizes M2 macrophages versus M1 phenotype through Gq signaling by regulating the transcription of genes involoved in immune function (PubMed:34133934). In activated M1 macrophages, plays a pro-inflammatory role in response to LPS (By similarity). Expressed in dendritic cells, where it is involved in the sensing of immunological danger and enhances immunity. Mediates succinate triggered intracelleular calcium mobilization, induces migratory responses and acts in synergy with Toll-like receptor ligands for the production of proinflammatory cytokines as well as an enhancement of antigen-specific activation of helper T cells (PubMed:18820681). In the small intestine, mediates the activation of tuft cells by dietary succinate and triggers type 2 immunity (By similarity). In adipocytes, plays an important role in the control of energy metabolism. In response to succinate, controls leptin expression in an AMPK-JNK-CEBPA-dependent as well as circadian clock-regulated manner (By similarity). In muscle tissue, is expressed in non-muscle cells and coordinates muscle remodeling in response to the succinate produced during exercise training in a paracrine manner (By similarity). In retina, acts as a mediator of vessel growth during retinal development. In response to succinate, regulates the production of angiogenic factors, including VEGF, by retinal ganglion neurons (By similarity).
INTERACTION: Q9BXA5; P13473-2: LAMP2; NbExp=3; IntAct=EBI-17962797, EBI-21591415; Q9BXA5; Q9Y371: SH3GLB1; NbExp=3; IntAct=EBI-17962797, EBI-2623095; Q9BXA5; Q9NUH8: TMEM14B; NbExp=3; IntAct=EBI-17962797, EBI-8638294;
SUBCELLULAR LOCATION: Cell membrane ; Multi-pass membrane protein
TISSUE SPECIFICITY: Expressed specifically in kidney (PubMed:11273702). Highly expressed in immature dendritic cells, expression rapidly downregulates after maturation. Also expressed in macrophages (PubMed:18820681).
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
CAUTION: It is uncertain whether Met-1 or Met-5 is the initiator.
SEQUENCE CAUTION: Sequence=AAK29080.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence=;

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: SUCNR1
Diseases sorted by gene-association score: exudative vitreoretinopathy 1 (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 5.82 RPKM in Thyroid
Total median expression: 19.71 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -30.40105-0.290 Picture PostScript Text
3' UTR -660.203071-0.215 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_7TM

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

ModBase Predicted Comparative 3D Structure on Q9BXA5
FrontTopSide
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004930 G-protein coupled receptor activity
GO:0038023 signaling receptor activity

Biological Process:
GO:0002001 renin secretion into blood stream
GO:0002281 macrophage activation involved in immune response
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0032611 interleukin-1 beta production
GO:0042593 glucose homeostasis
GO:0050729 positive regulation of inflammatory response
GO:0050921 positive regulation of chemotaxis
GO:0051592 response to calcium ion
GO:0060177 regulation of angiotensin metabolic process

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  LP895451 - Sequence 315 from Patent EP3253886.
AK290420 - Homo sapiens cDNA FLJ75637 complete cds, highly similar to Homo sapiens succinate receptor 1 (SUCNR1), mRNA.
BC030948 - Homo sapiens succinate receptor 1, mRNA (cDNA clone MGC:32514 IMAGE:4594810), complete cds.
AF247785 - Homo sapiens P2Y purinoceptor 1 mRNA, complete cds.
AF348078 - Homo sapiens G-protein coupled receptor 91 (GPR91) mRNA, complete cds.
CU689042 - Synthetic construct Homo sapiens gateway clone IMAGE:100022248 5' read SUCNR1 mRNA.
KJ894342 - Synthetic construct Homo sapiens clone ccsbBroadEn_03736 SUCNR1 gene, encodes complete protein.
EU432110 - Homo sapiens succinate receptor 1 (SUCNR1) mRNA, complete cds.
DQ895895 - Synthetic construct Homo sapiens clone IMAGE:100010355; FLH188698.01L; RZPDo839F0263D succinate receptor 1 (SUCNR1) gene, encodes complete protein.
JD039966 - Sequence 20990 from Patent EP1572962.
JD537527 - Sequence 518551 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9BXA5 (Reactome details) participates in the following event(s):

R-HSA-3296244 SUCNR1 binds SUCCA
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-418594 G alpha (i) signalling events
R-HSA-500792 GPCR ligand binding
R-HSA-388396 GPCR downstream signalling
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8K305, ENST00000362032.1, ENST00000362032.2, ENST00000362032.3, ENST00000362032.4, ENST00000362032.5, GPR91, NM_033050, Q8TDQ8, Q9BXA5, SUCR1_HUMAN, uc318cmm.1
UCSC ID: ENST00000362032.6_3
RefSeq Accession: NM_033050
Protein: Q9BXA5 (aka SUCR1_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.