Human Gene EPS8 (ENST00000281172.10_8) from GENCODE V45lift37
  Description: Signaling adapter that controls various cellular protrusions by regulating actin cytoskeleton dynamics and architecture. Depending on its association with other signal transducers, can regulate different processes. Together with SOS1 and ABI1, forms a trimeric complex that participates in transduction of signals from Ras to Rac by activating the Rac-specific guanine nucleotide exchange factor (GEF) activity. Acts as a direct regulator of actin dynamics by binding actin filaments and has both barbed-end actin filament capping and actin bundling activities depending on the context. Displays barbed-end actin capping activity when associated with ABI1, thereby regulating actin- based motility process: capping activity is auto-inhibited and inhibition is relieved upon ABI1 interaction. Also shows actin bundling activity when associated with BAIAP2, enhancing BAIAP2-dependent membrane extensions and promoting filopodial protrusions. Involved in the regulation of processes such as axonal filopodia growth, stereocilia length, dendritic cell migration and cancer cell migration and invasion. Acts as a regulator of axonal filopodia formation in neurons: in the absence of neurotrophic factors, negatively regulates axonal filopodia formation via actin-capping activity. In contrast, it is phosphorylated in the presence of BDNF leading to inhibition of its actin-capping activity and stimulation of filopodia formation. Component of a complex with WHRN and MYO15A that localizes at stereocilia tips and is required for elongation of the stereocilia actin core. Indirectly involved in cell cycle progression; its degradation following ubiquitination being required during G2 phase to promote cell shape changes. (from UniProt Q12929)
RefSeq Summary (NM_004447): This gene encodes a member of the EPS8 family. This protein contains one PH domain and one SH3 domain. It functions as part of the EGFR pathway, though its exact role has not been determined. Highly similar proteins in other organisms are involved in the transduction of signals from Ras to Rac and growth factor-mediated actin remodeling. Alternate transcriptional splice variants of this gene have been observed but have not been thoroughly characterized. [provided by RefSeq, Jul 2008].
Gencode Transcript: ENST00000281172.10_8
Gencode Gene: ENSG00000151491.14_19
Transcript (Including UTRs)
   Position: hg19 chr12:15,773,068-15,942,322 Size: 169,255 Total Exon Count: 21 Strand: -
Coding Region
   Position: hg19 chr12:15,774,251-15,835,885 Size: 61,635 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureGO Annotations
mRNA DescriptionsOther NamesMethods
Data last updated at UCSC: 2024-04-24 11:59:55

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:15,773,068-15,942,322)mRNA (may differ from genome)Protein (822 aa)
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-  Comments and Description Text from UniProtKB
  ID: EPS8_HUMAN
DESCRIPTION: RecName: Full=Epidermal growth factor receptor kinase substrate 8;
FUNCTION: Signaling adapter that controls various cellular protrusions by regulating actin cytoskeleton dynamics and architecture. Depending on its association with other signal transducers, can regulate different processes. Together with SOS1 and ABI1, forms a trimeric complex that participates in transduction of signals from Ras to Rac by activating the Rac-specific guanine nucleotide exchange factor (GEF) activity. Acts as a direct regulator of actin dynamics by binding actin filaments and has both barbed-end actin filament capping and actin bundling activities depending on the context. Displays barbed-end actin capping activity when associated with ABI1, thereby regulating actin- based motility process: capping activity is auto-inhibited and inhibition is relieved upon ABI1 interaction. Also shows actin bundling activity when associated with BAIAP2, enhancing BAIAP2-dependent membrane extensions and promoting filopodial protrusions. Involved in the regulation of processes such as axonal filopodia growth, stereocilia length, dendritic cell migration and cancer cell migration and invasion. Acts as a regulator of axonal filopodia formation in neurons: in the absence of neurotrophic factors, negatively regulates axonal filopodia formation via actin-capping activity. In contrast, it is phosphorylated in the presence of BDNF leading to inhibition of its actin-capping activity and stimulation of filopodia formation. Component of a complex with WHRN and MYO15A that localizes at stereocilia tips and is required for elongation of the stereocilia actin core. Indirectly involved in cell cycle progression; its degradation following ubiquitination being required during G2 phase to promote cell shape changes.
SUBUNIT: Homodimer. Part of a complex consisting of ABI1, EPS8 and SOS1. Interacts with MYO15A and WHRN. Interacts with LANCL1 (By similarity). Interacts with EGFR; mediates EPS8 phosphorylation (By similarity). Interacts with BAIAP2. Interacts with SHB.
INTERACTION: Q12929; P49419: ALDH7A1; NbExp=2; IntAct=EBI-375576, EBI-726842; Q12929; Q9UQB8: BAIAP2; NbExp=10; IntAct=EBI-375576, EBI-525456; Q12929; Q9UQB8-4: BAIAP2; NbExp=4; IntAct=EBI-375576, EBI-6174091; Q12929; Q9UHR4: BAIAP2L1; NbExp=4; IntAct=EBI-375576, EBI-2483278; Q12929; Q96GS4: BORCS6; NbExp=3; IntAct=EBI-375576, EBI-10193358; Q12929; Q13895: BYSL; NbExp=3; IntAct=EBI-375576, EBI-358049; Q12929; Q9UFG5: C19orf25; NbExp=3; IntAct=EBI-375576, EBI-741214; Q12929; O14936: CASK; NbExp=3; IntAct=EBI-375576, EBI-1215506; Q12929; P00533: EGFR; NbExp=4; IntAct=EBI-375576, EBI-297353; Q12929; Q969U6-1: FBXW5; NbExp=3; IntAct=EBI-375576, EBI-16031873; Q12929; Q0D2H9: GOLGA8DP; NbExp=3; IntAct=EBI-375576, EBI-10181276; Q12929; P62993: GRB2; NbExp=3; IntAct=EBI-375576, EBI-401755; Q12929; P07910: HNRNPC; NbExp=3; IntAct=EBI-375576, EBI-357966; Q12929; Q15735: INPP5J; NbExp=3; IntAct=EBI-375576, EBI-10236940; Q12929; Q06455-4: RUNX1T1; NbExp=3; IntAct=EBI-375576, EBI-10224192; Q12929; Q969G3: SMARCE1; NbExp=3; IntAct=EBI-375576, EBI-455078;
SUBCELLULAR LOCATION: Cytoplasm, cell cortex Cell projection, ruffle membrane Cell projection, growth cone Cell projection, stereocilium napse, synaptosome Note=Localizes at the tips of the stereocilia of the inner and outer hair cells (By similarity). Localizes to the midzone of dividing cells.
TISSUE SPECIFICITY: Expressed in all tissues analyzed, including heart, brain, placenta, lung, liver, skeletal muscle, kidney and pancreas. Expressed in all epithelial and fibroblastic lines examined and in some, but not all, hematopoietic cells.
DOMAIN: The effector region is required for activating the Rac-specific guanine nucleotide exchange factor (GEF) activity. It mediates both barbed-end actin capping and actin bundling activities. The capping activity is mediated by an amphipathic helix that binds within the hydrophobic pocket at the barbed ends of actin blocking further addition of actin monomers, while the bundling activity is mediated by a compact 4 helix bundle, which contacts 3 actin subunits along the filament (By similarity).
DOMAIN: The SH3 domain mediates interaction with SHB.
PTM: Ubiquitinated by the SCF(FBXW5) E3 ubiquitin-protein ligase complex during G2 phase, leading to its transient degradation and subsequent cell shape changes required to allow mitotic progression. Reappears at the midzone of dividing cells (By similarity).
PTM: Phosphorylation at Ser-625 and Thr-629 by MAPK following BDNF treatment promotes removal from actin and filopodia formation (By similarity). Phosphorylated by several receptor tyrosine kinases.
DISEASE: Deafness, autosomal recessive, 102 (DFNB102) [MIM:615974]: A form of non-syndromic deafness characterized by profound hearing loss affecting all frequencies. Vestibular function is unaffected. Note=The disease is caused by variants affecting the gene represented in this entry.
DISEASE: Note=Defects in EPS8 are associated with some cancers, such as pancreatic, oral squamous cell carcinomas or pituitary cancers. Contributes to cell transformation in response to growth factor treatment and is overexpressed in a number of tumors, indicating that EPS8 levels must be tightly regulated.
SIMILARITY: Belongs to the EPS8 family.
WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and Haematology; URL="https://atlasgeneticsoncology.org/gene/40476/EPS8";

-  Primer design for this transcript
 

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-  MalaCards Disease Associations
  MalaCards Gene Search: EPS8
Diseases sorted by gene-association score: deafness, autosomal recessive 102* (969), autosomal recessive non-syndromic sensorineural deafness type dfnb* (56)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 57.99 RPKM in Adipose - Subcutaneous
Total median expression: 887.24 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -113.00249-0.454 Picture PostScript Text
3' UTR -255.101183-0.216 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR039801 - EPS8-like
IPR033928 - EPS8_PTB
IPR035462 - Eps8_SH3
IPR011993 - PH-like_dom_sf
IPR013625 - PTB
IPR006020 - PTB/PI_dom
IPR013761 - SAM/pointed_sf
IPR041418 - SAM_3
IPR036028 - SH3-like_dom_sf
IPR001452 - SH3_domain

Pfam Domains:
PF08416 - Phosphotyrosine-binding domain
PF18016 - n/a
PF00018 - SH3 domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2E8M - NMR 7TZK - X-ray


ModBase Predicted Comparative 3D Structure on Q12929
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005515 protein binding
GO:0035591 signaling adaptor activity
GO:0048365 Rac GTPase binding
GO:0030676 Rac guanyl-nucleotide exchange factor activity

Biological Process:
GO:0007266 Rho protein signal transduction
GO:0008344 adult locomotory behavior
GO:0008360 regulation of cell shape
GO:0009967 positive regulation of signal transduction
GO:0010458 exit from mitosis
GO:0016601 Rac protein signal transduction
GO:0030832 regulation of actin filament length
GO:0031532 actin cytoskeleton reorganization
GO:0035023 regulation of Rho protein signal transduction
GO:0036336 dendritic cell migration
GO:0048149 behavioral response to ethanol
GO:0051016 barbed-end actin filament capping
GO:0051017 actin filament bundle assembly
GO:0051764 actin crosslink formation
GO:0070358 actin polymerization-dependent cell motility
GO:0099072 regulation of postsynaptic specialization membrane neurotransmitter receptor levels
GO:1900029 positive regulation of ruffle assembly
GO:1990830 cellular response to leukemia inhibitory factor

Cellular Component:
GO:0005737 cytoplasm
GO:0005886 plasma membrane
GO:0005903 brush border
GO:0005938 cell cortex
GO:0014069 postsynaptic density
GO:0016020 membrane
GO:0017146 NMDA selective glutamate receptor complex
GO:0030054 cell junction
GO:0030426 growth cone
GO:0031982 vesicle
GO:0032420 stereocilium
GO:0032421 stereocilium bundle
GO:0032426 stereocilium tip
GO:0032587 ruffle membrane
GO:0042995 cell projection
GO:0043005 neuron projection
GO:0045202 synapse
GO:0070062 extracellular exosome
GO:0098978 glutamatergic synapse


-  Descriptions from all associated GenBank mRNAs
  LF207447 - JP 2014500723-A/14950: Polycomb-Associated Non-Coding RNAs.
BC005836 - Homo sapiens epidermal growth factor receptor pathway substrate 8, mRNA (cDNA clone IMAGE:2962900), partial cds.
BC030010 - Homo sapiens epidermal growth factor receptor pathway substrate 8, mRNA (cDNA clone MGC:26317 IMAGE:4820933), complete cds.
U12535 - Human epidermal growth factor receptor kinase substrate (Eps8) mRNA, complete cds.
AK292931 - Homo sapiens cDNA FLJ78485 complete cds, highly similar to Homo sapiens epidermal growth factor receptor pathway substrate 8 (EPS8), mRNA.
AK291777 - Homo sapiens cDNA FLJ76317 complete cds, highly similar to Homo sapiens epidermal growth factor receptor pathway substrate 8 (EPS8), mRNA.
AK304860 - Homo sapiens cDNA FLJ56405 complete cds, highly similar to Epidermal growth factor receptor kinase substrate 8.
MA443024 - JP 2018138019-A/14950: Polycomb-Associated Non-Coding RNAs.
LF366264 - JP 2014500723-A/173767: Polycomb-Associated Non-Coding RNAs.
JD039958 - Sequence 20982 from Patent EP1572962.
LF366265 - JP 2014500723-A/173768: Polycomb-Associated Non-Coding RNAs.
JD454424 - Sequence 435448 from Patent EP1572962.
JD475501 - Sequence 456525 from Patent EP1572962.
JD329969 - Sequence 310993 from Patent EP1572962.
LF366266 - JP 2014500723-A/173769: Polycomb-Associated Non-Coding RNAs.
JD122709 - Sequence 103733 from Patent EP1572962.
AK316239 - Homo sapiens cDNA, FLJ79138 complete cds, highly similar to Epidermal growth factor receptor kinase substrate 8.
JD022238 - Sequence 3262 from Patent EP1572962.
AK301834 - Homo sapiens cDNA FLJ50272 complete cds, highly similar to Epidermal growth factor receptor kinase substrate 8.
JD028737 - Sequence 9761 from Patent EP1572962.
AK316134 - Homo sapiens cDNA, FLJ79033 complete cds, highly similar to Epidermal growth factor receptor kinase substrate 8.
KJ896778 - Synthetic construct Homo sapiens clone ccsbBroadEn_06172 EPS8 gene, encodes complete protein.
AB587363 - Synthetic construct DNA, clone: pF1KB3008, Homo sapiens EPS8 gene for epidermal growth factor receptor pathway substrate 8, without stop codon, in Flexi system.
LF366267 - JP 2014500723-A/173770: Polycomb-Associated Non-Coding RNAs.
LF366268 - JP 2014500723-A/173771: Polycomb-Associated Non-Coding RNAs.
LF366274 - JP 2014500723-A/173777: Polycomb-Associated Non-Coding RNAs.
LF366279 - JP 2014500723-A/173782: Polycomb-Associated Non-Coding RNAs.
LF366283 - JP 2014500723-A/173786: Polycomb-Associated Non-Coding RNAs.
CU688796 - Synthetic construct Homo sapiens gateway clone IMAGE:100020473 5' read EPS8 mRNA.
LF366286 - JP 2014500723-A/173789: Polycomb-Associated Non-Coding RNAs.
LF366287 - JP 2014500723-A/173790: Polycomb-Associated Non-Coding RNAs.
LF366288 - JP 2014500723-A/173791: Polycomb-Associated Non-Coding RNAs.
LF366289 - JP 2014500723-A/173792: Polycomb-Associated Non-Coding RNAs.
LF366290 - JP 2014500723-A/173793: Polycomb-Associated Non-Coding RNAs.
LF366291 - JP 2014500723-A/173794: Polycomb-Associated Non-Coding RNAs.
MA601841 - JP 2018138019-A/173767: Polycomb-Associated Non-Coding RNAs.
MA601842 - JP 2018138019-A/173768: Polycomb-Associated Non-Coding RNAs.
MA601843 - JP 2018138019-A/173769: Polycomb-Associated Non-Coding RNAs.
MA601844 - JP 2018138019-A/173770: Polycomb-Associated Non-Coding RNAs.
MA601845 - JP 2018138019-A/173771: Polycomb-Associated Non-Coding RNAs.
MA601851 - JP 2018138019-A/173777: Polycomb-Associated Non-Coding RNAs.
MA601856 - JP 2018138019-A/173782: Polycomb-Associated Non-Coding RNAs.
MA601860 - JP 2018138019-A/173786: Polycomb-Associated Non-Coding RNAs.
MA601863 - JP 2018138019-A/173789: Polycomb-Associated Non-Coding RNAs.
MA601864 - JP 2018138019-A/173790: Polycomb-Associated Non-Coding RNAs.
MA601865 - JP 2018138019-A/173791: Polycomb-Associated Non-Coding RNAs.
MA601866 - JP 2018138019-A/173792: Polycomb-Associated Non-Coding RNAs.
MA601867 - JP 2018138019-A/173793: Polycomb-Associated Non-Coding RNAs.
MA601868 - JP 2018138019-A/173794: Polycomb-Associated Non-Coding RNAs.
LF366327 - JP 2014500723-A/173830: Polycomb-Associated Non-Coding RNAs.
JD326363 - Sequence 307387 from Patent EP1572962.
MA601904 - JP 2018138019-A/173830: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A6NMC3, ENST00000281172.1, ENST00000281172.2, ENST00000281172.3, ENST00000281172.4, ENST00000281172.5, ENST00000281172.6, ENST00000281172.7, ENST00000281172.8, ENST00000281172.9, EPS8_HUMAN, NR_182223, Q12929, Q8N6J0, uc317jvx.1
UCSC ID: ENST00000281172.10_8
RefSeq Accession: NM_004447
Protein: Q12929 (aka EPS8_HUMAN)

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.